California Chinook salmon indicators code 11/24/25

California Chinook salmon indicators code 11/24/25

<p dir="ltr">Code for 11/24/24 submission of "<b>Indicators of freshwater and marine ecosystem states provide two year outlooks on California Chinook salmon recruitment, contextualize past dynamics, and document shifting baselines</b>"</p>

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Xehetasun bibliografikoak
Egile nagusia:	Stuart Munsch (18265750) (author)
Argitaratua:	2025
Gaiak:	Ecology not elsewhere classified Fisheries
Etiketak:	Etiketa erantsi Etiketarik gabe, Izan zaitez lehena erregistro honi etiketa jartzen!

Antzeko izenburuak

California Chinook salmon indicators data
nork: Stuart Munsch (18265750)
Argitaratua: (2025)

fishing data
nork: Chuanyang Huang (20651768)
Argitaratua: (2025)

Data Sheet 1_Importance of near-bottom oceanographic data in modeling the distribution of eulachon bycatch in the U.S. West Coast shrimp trawl fishery.docx
nork: Leif K. Rasmuson (17941511)
Argitaratua: (2025)

Video 1_Importance of near-bottom oceanographic data in modeling the distribution of eulachon bycatch in the U.S. West Coast shrimp trawl fishery.mp4
nork: Leif K. Rasmuson (17941511)
Argitaratua: (2025)

Salmon feed ingridients
nork: Atle Guttormsen (22682399)
Argitaratua: (2025)

25.11Amur tiger urine increases small -bodied mesopredators predatory behavior
nork: Wannian Cheng (16613151)
Argitaratua: (2025)

Code and data availability information for Nature Communications manuscript NCOMMS-25-53114-T (in review)
nork: Norman Julius Steinert (22682117)
Argitaratua: (2025)

Data and code for models and plots to accompany the manuscript "Traits explain canopy tree occurrence along regional environmental gradients, a subset combine to be useful."
nork: PETER VESK (1145399)
Argitaratua: (2025)

Data & Code - Testing for differences in consumer-based nutrient cycling between male and female wolf spiders (<i>Hogna carolinensis</i>)
nork: Colton Herzog (22664552)
Argitaratua: (2025)

Survival data from each experiment with SAS code. All the data without code are included in the associated excel files
nork: Steven Juliano (4487284)
Argitaratua: (2025)

MATLAB_code.
nork: Minh Tran (7698803)
Argitaratua: (2025)

Table of misclassification coding structure. Codes in the left-hand column were given to individual records misclassified by the application according to the false positive and false negative code definitions and examples described.
nork: Stefan Saverimuttu (20882325)
Argitaratua: (2025)

Nonlinear driving mechanism of PM<sub>2.5</sub> and spatial governance considering time series information entropy
nork: Tingting Kang (4497127)
Argitaratua: (2025)

Integration site analysis and near full-length (NFL) sequencing of p24 + cells. (A) Donut charts displaying the number of HIV integration sites (IS) obtained by ISLA from p24 + cells for four participants in the corresponding Fiebig group. White parts indicate IS detected once and colored parts indicate IS detected more than once. The total number of IS generated by ISLA for each participant is shown in the middle of each donut. (B) Proportion of intact and defective proviral sequences from p24 + cells (n = 47 sequences).
nork: Tine Struyve (22683295)
Argitaratua: (2025)

Additional file 1 of Intimate partner violence and firearm purchasing: cross-sectional analysis of statewide survey data from California and Louisiana adults
nork: Jakana Thomas (22685885)
Argitaratua: (2025)

Data and code for manuscript <b>Artificial Surface Water Broadens the Spatiotemporal Footprint of Herbivores and Alters Species Responses, published in Ecological Applications</b>
nork: Robert McCleery (16548156)
Argitaratua: (2025)

Regional analysis of socioeconomic indicators and federated learning performance gain.
nork: Roberta Moreira Wichmann (14259316)
Argitaratua: (2025)

A zoomed-in view of participant 11 from Fig 11.
nork: Mohammed Safayet Arefin (22683505)
Argitaratua: (2025)

Data and code for spillover analysis described in Cumming, G.S. (2025). <b>Protected area management has significant spillover effects on vegetation</b>. <i>Nature, </i>https://doi.org/10.1038/s41586-025-09837-8
nork: Graeme Cumming (20423411)
Argitaratua: (2025)

Data and python code used in the paper: <b>Climate moderates the association between ecological zoning and forest productivity across China</b> (under review)
nork: Pedro Cabral (18947566)
Argitaratua: (2025)

Data&Codes
nork: Anonymous (22685366)
Argitaratua: (2025)

NIMAm code
nork: liu xinchen (22682249)
Argitaratua: (2025)

Coding Sheet
nork: Mohammad Reza Anani Sarab (22681586)
Argitaratua: (2025)

<b>Table S3. </b>Models to explain descriptors of assemblages of aerial insectivorous bats in the Savannas of Amapá, northeast of the Brazilian Amazon. AgriculturalCover_2500: Plantation or croplands cover in 2.5 km radius buffer; ForestCover_2500: Forest cover in 2.5 km radius buffer;<b> </b>Zi: sets the zero-inflation formula (0 specifies no zero-inflation).
nork: William Carvalho (13890261)
Argitaratua: (2025)

Frequencies of p24 + cells across Fiebig stages.
nork: Tine Struyve (22683295)
Argitaratua: (2025)

liverRegression code.
nork: Amy Stephen (22684448)
Argitaratua: (2025)

Data sets and coding scripts for research on sensory processing in ADHD and ASD
nork: Vesko Varbanov (9687029)
Argitaratua: (2025)

Reported direction of the guard dogs’ behaviour when guarding various farm animal species (N = 25 farms).
nork: Konstanze Krueger (6750239)
Argitaratua: (2025)

Frequencies and phenotypes of p24 + cells following PMA/Tat_LNP stimulation. (A-D) CD4 T cells from Acute UD, Acute UD + 5, Chronic UD and Chronic UD + x individuals were stimulated for 24h with PMA/Tat_LNP (A) Frequencies of p24 + cells in CD4 T cells. Median values are plotted. Open circles represent limit of detection (LOD). (B) Percentages of HIV-infected cells expressing the p24 protein following stimulation. Median values are plotted. Participants with an LOD frequency of p24 + cells in CD4 T cells or unreportable/unavailable total HIV DNA quantification were not included in this analysis. (C) Frequencies of cells with a given phenotype (TN, TCM/TTM, TEM, TTd) in p24+ and p24- fractions. Participants with a minimal number of 4 p24 + cells are represented. Grey bars depict median values. (D) Proportions of all p24 + cells with a given phenotype (TN, TCM/TTM, TEM, TTd). p24 + cells (
nork: Tine Struyve (22683295)
Argitaratua: (2025)

FACS analysis of p24 + cells across acute and chronic cohorts.
nork: Tine Struyve (22683295)
Argitaratua: (2025)

Supplementary code for DBS pointnet
nork: Shumao Xu (15201127)
Argitaratua: (2025)

Figure 6 – Source Data and MATLAB Code (dmPFC firing, neural selectivity, and LDA decoding)
nork: Jinseon Yu (22598699)
Argitaratua: (2025)

Gating strategy and phenotypic distribution of p24 + cells for the acute and chronic cohorts.
nork: Tine Struyve (22683295)
Argitaratua: (2025)

Typical 24 hour time series of a near-surface station 6 at the Starzach site’s main mofette area with global average concentration reference of 415 ppm [2] (top), and peak duration and time between peaks (bottom).
nork: Yann Georg Büchau (22683667)
Argitaratua: (2025)

History teacher strategies coded and grouped
nork: Michael Stack (22675796)
Argitaratua: (2025)

Framework for the acceptability of technological health innovations [25].
nork: Wezzie S. Lora (18139765)
Argitaratua: (2025)

The dataset of Co<sup>2</sup>FuLL, paper accepted by ASE'25
nork: Chaopeng Dong (15421424)
Argitaratua: (2025)

Comparison of integration sites from total CD4 T cells and p24 + cells.
nork: Tine Struyve (22683295)
Argitaratua: (2025)

Comparison of phenylacetonitrile (PAN) metabolizing activity of <i>Saccharomyces cerevisiae</i> ChCR11 and INVSc1 expressing <i>CYP3201B1.</i>
nork: Takuya Yamaguchi (4543105)
Argitaratua: (2025)

Immunofluorescence analysis of the indicated proteins expressed in HeLa cells.
nork: Lin Xie (136792)
Argitaratua: (2025)

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