Publicly available existing MCC tree of Ebola sequences from 2014 obtained from Dellicour et. al (53).

<p>The highlighted clade consisting of predominantly Sierra Leone sequences was subsampled for our analysis, and the small Guinea subclades and singleton nodes that represent repeated exports from Sierra Leone were removed. The origin of the highlighted clade was March 20<sup>th</sup&...

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Bibliographic Details
Main Author:	Ciara Judge (20161514) (author)
Other Authors:	Timothy Vaughan (5654278) (author), Timothy Russell (20161517) (author), Sam Abbott (9548946) (author), Louis du Plessis (3264087) (author), Tanja Stadler (118822) (author), Oliver Brady (5331668) (author), Sarah Hill (101064) (author)
Published:	2024
Subjects:	Genetics Biotechnology Evolutionary Biology Cancer Infectious Diseases Computational Biology Mathematical Sciences not elsewhere classified surveillance rapidly changes scaled trees estimated remain largely distinct poorly sampled epidemics effective reproduction number accommodate future extensions respiratory virus outbreaks approach scales efficiently 2014 ebola outbreak phylodynamic observation models div >< p </ sub >) </ sub simulated outbreaks outbreak dynamics joint approach xlink "> weighted according sierra leone retrospective analysis phylogenetic uncertainty pathogen phylodynamics joint inference integrating phylodynamic infectious disease increases certainty genetic sequences fundamental challenge existing methods demonstrate advances dataset size complementary strengths circulating pathogen case incidence accurately estimating
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Publicly available existing MCC tree of Ebola sequences from 2014 obtained from Dellicour et. al (53).

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