Infection dynamics and phylogenetics of HEV in two farms.
<p><b>2A:</b> Farm structure, indicating all compartments in black and white, and the sampled farm compartments by three colored rectangles, each with twelve pens inside. <b>2B</b>: Timeline of the study with three sampled batches and weekly HEV PCR results per pen (hor...
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2025
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| Yhteenveto: | <p><b>2A:</b> Farm structure, indicating all compartments in black and white, and the sampled farm compartments by three colored rectangles, each with twelve pens inside. <b>2B</b>: Timeline of the study with three sampled batches and weekly HEV PCR results per pen (horizontal line) per compartment (same colors as 2A). Legend: Serological results at the start and end of batch B and C are indicated by pink circles that are darker in case more pigs were HEV seropositive (maximally 4). Open circles (fecal dropping samples) and triangles (boot sock samples) indicate weeks in which HEV sequence data was obtained. <b>2C</b>: Maximum likelihood tree with all sequences from both farms, and HEV 3c sequences extracted from NCBI. Legend: Tip labels represent the farm (A or <b>B)</b>, compartment (1/2/3), batch (A/B/C), week of sampling within the batch, type of sample (fecal dropping (FD) or bootsock (BS) and pen number (1 to 36). Numbers at the internal nodes represent bootstrap support values (>0.70).</p> |
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